Quick update:
I’ve made the bug report and done a little testing.
I can confirm that bonuses not being applied in the Collection menu when you select a Troop from inside a team on the left hand side are:
- Pet
- Team Kingdom
- Team Troop Type
- Team Color
The following bonuses are applying correctly in the Collection menu when selecting a troop from the left side inside a team:
- Kingdom
- Guild
- Renown